PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G132600.1
Common NamePOPTR_0014s12710g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 177aa    MW: 19928.3 Da    PI: 6.7836
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G132600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.22.8e-5431126297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wala+lGf+dy eplk yl kyre
  Potri.014G132600.1  31 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALASLGFDDYSEPLKRYLYKYRE 121
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +ege+
  Potri.014G132600.1 122 VEGER 126
                         ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-5328143IPR009072Histone-fold
SuperFamilySSF471134.81E-4133145IPR009072Histone-fold
PfamPF008087.4E-2836100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.3E-206482No hitNo description
PROSITE patternPS0068506783IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.3E-2083101No hitNo description
PRINTSPR006156.3E-20102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVDSIGNNNS DKEWLKYDFA GGSTSDDGII KEQDRLLPIA NVGRIMKQIL PPNAKISKEA  60
KETMQECVSE FISFVTGEAS DKCHKEKRKT VNGDDICWAL ASLGFDDYSE PLKRYLYKYR  120
EVEGERASHN KASNNEEKDD SSKYRGESIL KATVYPHTPL KLPGNIDRSN SLSRRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4530121192Transcription factor HapC (Eurofung)
4g92_B6e-4530121192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321022.21e-130hypothetical protein POPTR_0014s12710g
SwissprotO822489e-61NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLB9I9U41e-130B9I9U4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s12710.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.15e-62nuclear factor Y, subunit B5